Roy 2025 Figures and tables

April 24, 2025

Introduction

• This page is provided as a resource to all summary genotypic frequencies used in figures and/or tables of Roy2025. They are specific to A*11:01 or B*58:01 and the respective states, counties, hexagons, or catchment areas. If interested in different HLAs, please read on.
• Once a user has downloaded all the requisite source information per the package’s instructions, you can build the package and use the same functions and approach used for this vignette, but substitute your HLA or region of interest.

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Figure 1

1A - Continental US A11

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1B - A11:01 by County

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1C - NDMP Correlations

NMDP Values are not publicly available for privacy reasons. Please contact co-Author Martin Maiers for inquiries.

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1D - A11:01 by CA County

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1E - A11:01 by CA by H4 Hexagon

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1F - A11:01 Catchment

• For a table of A11:01 catchment, refer to Table 2 below.

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Figure 2

2A - B58:01 by County

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2B - B58:01 in MS by County

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2C - B58:01 in MS by Hexagon

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2D - B58:01 Catchment

• For a table of B*58:01 by catchment see Supplemental Table 4 below.

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Tables

Table 1: United States 2020 Census Adjusted HLA-A*11:01 Genotypic Frequencies

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Table 2: HLA-A*11:01 Population-adjusted genotypic frequencies for top 11 NCI Catchment areas.

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Supplemental Tables

Supplemental Table 1 - California County population-adjusted HLA-A*11:01 Genotypic frequencies

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Supplemental Table 2 - United States 2020 Census Adjusted HLA-B*58:01 Genotypic Frequencies for Mississippi

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Supplemental Table 3 - Mississippi County population-adjusted HLA-B*58:01 Genotypic frequencies

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Supplemental Table 4 - HLA-B*58:01 Population-adjusted genotypic frequencies by NCI Catchment areas

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References